SNP Report
Basic Infomation
| Name | rs11564221 dbSNP |
|---|---|
| Location | chr:12,40361398 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506138 | 0.88[GIH][hapmap] |
| rs1086490 | 0.81[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs10877837 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs10877867 | 0.88[CHB][hapmap];0.94[ASN][1000 genomes] |
| rs11173862 | 1.00[ASW][hapmap] |
| rs11174292 | 0.88[GIH][hapmap] |
| rs11174370 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11174427 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs11174532 | 0.89[EUR][1000 genomes] |
| rs11174533 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11174536 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11514248 | 0.87[EUR][1000 genomes] |
| rs11564282 | 0.81[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs12371119 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs12810368 | 0.88[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs12827948 | 0.85[ASN][1000 genomes] |
| rs28370607 | 1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs28370611 | 0.91[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7311756 | 1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.88[ASN][1000 genomes] |
| rs73280629 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs992851 | 1.00[ASW][hapmap];0.81[CEU][hapmap];0.88[GIH][hapmap];0.83[LWK][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014