SNP Report
Basic Infomation
| Name | rs11173862 dbSNP |
|---|---|
| Location | chr:12,40236374 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506138 | 1.00[CHD][hapmap] |
| rs11173668 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11173671 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11173764 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11173920 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11174086 | 1.00[ASN][1000 genomes] |
| rs11174285 | 0.89[CEU][hapmap] |
| rs11174292 | 0.88[CEU][hapmap];0.83[CHD][hapmap] |
| rs11174293 | 0.89[CEU][hapmap] |
| rs11174370 | 1.00[ASW][hapmap] |
| rs11564221 | 1.00[ASW][hapmap] |
| rs4128689 | 1.00[CHD][hapmap] |
| rs4296099 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4542485 | 0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs992851 | 1.00[ASW][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf40 | RNA binding protein mediated regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014