SNP Report

Basic Infomation

Name	rs549790 dbSNP
Location	chr:12,40356270
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11174115	1.00[ASW][hapmap]
rs11174631	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs11564216	1.00[ASW][hapmap];0.95[MEX][hapmap]
rs12423682	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12423983	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12425167	0.88[AMR][1000 genomes]
rs12425561	1.00[AFR][1000 genomes]
rs17483919	1.00[AFR][1000 genomes]
rs17559478	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17559800	0.90[MEX][hapmap];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17560267	0.90[AMR][1000 genomes]
rs17560365	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1874558	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2173134	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28365669	1.00[JPT][hapmap]
rs28370602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28740171	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4768206	1.00[JPT][hapmap]
rs535458	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545385	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs566044	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs953493	0.90[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)