SNP Report
Basic Infomation
| Name | rs17560267 dbSNP |
|---|---|
| Location | chr:12,40317536 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11564216 | 0.84[MEX][hapmap] |
| rs12423473 | 1.00[JPT][hapmap] |
| rs12423682 | 1.00[LWK][hapmap];0.88[AMR][1000 genomes] |
| rs12423983 | 0.87[AMR][1000 genomes] |
| rs12425167 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17559478 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17559800 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17560365 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1874558 | 0.88[AMR][1000 genomes] |
| rs2173134 | 1.00[JPT][hapmap];0.90[AMR][1000 genomes] |
| rs28370602 | 0.90[AMR][1000 genomes] |
| rs28370606 | 0.90[AMR][1000 genomes] |
| rs28740171 | 0.85[AMR][1000 genomes] |
| rs535458 | 1.00[JPT][hapmap];0.90[AMR][1000 genomes] |
| rs545385 | 0.90[AMR][1000 genomes] |
| rs549790 | 0.90[AMR][1000 genomes] |
| rs566044 | 0.80[AMR][1000 genomes] |
| rs953493 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014