SNP Report

Basic Infomation

Name	rs12424040 dbSNP
Location	chr:12,40457624
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506143	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10506144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174631	0.86[AMR][1000 genomes]
rs11174697	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11175186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564108	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11564152	0.87[EUR][1000 genomes]
rs11564153	0.93[EUR][1000 genomes]
rs11564185	0.87[EUR][1000 genomes]
rs11564187	0.93[EUR][1000 genomes]
rs11564199	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11564209	0.87[EUR][1000 genomes]
rs11564210	0.93[EUR][1000 genomes]
rs11564216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564218	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12422544	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12422796	0.87[EUR][1000 genomes]
rs12424294	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12425561	0.86[ASN][1000 genomes]
rs12425630	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12426378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12427022	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1388585	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1388597	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1463717	0.87[EUR][1000 genomes]
rs17442924	0.93[EUR][1000 genomes]
rs17443178	0.86[EUR][1000 genomes]
rs17443185	0.93[EUR][1000 genomes]
rs17443206	0.93[EUR][1000 genomes]
rs17443600	0.87[EUR][1000 genomes]
rs17461664	0.87[EUR][1000 genomes]
rs17465946	0.80[EUR][1000 genomes]
rs17483919	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17484003	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708460	0.93[EUR][1000 genomes]
rs28365169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28365173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28365689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370637	0.84[AMR][1000 genomes]
rs28370649	0.86[EUR][1000 genomes]
rs28370650	0.86[EUR][1000 genomes]
rs28370664	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28370682	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28370830	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4768206	0.86[AMR][1000 genomes]
rs4768213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC2A13	Distal transcriptional regulation
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)