SNP Report

Basic Infomation

Name	rs17442924 dbSNP
Location	chr:12,40552165
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 60)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506144	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10506154	1.00[CEU][hapmap]
rs11174697	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11175186	0.93[EUR][1000 genomes]
rs11564152	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11564153	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11564185	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11564187	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11564199	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11564209	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11564210	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11564216	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11564266	1.00[CEU][hapmap]
rs11564271	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12422544	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12422796	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12424040	0.93[EUR][1000 genomes]
rs12426378	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12426639	1.00[CEU][hapmap]
rs12427245	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1388585	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1388597	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1463717	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17442380	1.00[JPT][hapmap]
rs17443178	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17443185	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17443206	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17443600	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17443656	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17443909	0.86[EUR][1000 genomes]
rs17444028	0.81[EUR][1000 genomes]
rs17444054	0.81[EUR][1000 genomes]
rs17444103	1.00[CEU][hapmap]
rs17461664	0.81[EUR][1000 genomes]
rs17465946	0.86[EUR][1000 genomes]
rs17466016	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17484003	0.93[EUR][1000 genomes]
rs17484342	0.81[EUR][1000 genomes]
rs17484493	1.00[CEU][hapmap]
rs17491124	1.00[JPT][hapmap]
rs2708460	1.00[EUR][1000 genomes]
rs28365169	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28365173	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28365229	1.00[CEU][hapmap]
rs28365681	1.00[JPT][hapmap]
rs28365689	0.93[EUR][1000 genomes]
rs28370649	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28370650	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28370664	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs28370682	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs28370748	1.00[JPT][hapmap]
rs28370756	1.00[JPT][hapmap]
rs28370830	0.86[EUR][1000 genomes]
rs36212067	0.81[EUR][1000 genomes]
rs36220738	0.81[EUR][1000 genomes]
rs4628750	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4768213	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4768226	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4768228	0.81[EUR][1000 genomes]
rs72547977	0.86[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)