SNP Report
Basic Infomation
| Name | rs17465540 dbSNP |
|---|---|
| Location | chr:12,40587700 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506145 | 0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11564133 | 0.85[AFR][1000 genomes] |
| rs11564160 | 0.85[AFR][1000 genomes] |
| rs11564194 | 0.86[ASN][1000 genomes] |
| rs1482282 | 0.85[AFR][1000 genomes] |
| rs17442108 | 0.85[AFR][1000 genomes] |
| rs17442304 | 0.85[AFR][1000 genomes] |
| rs17442742 | 0.86[ASN][1000 genomes] |
| rs17442749 | 0.86[ASN][1000 genomes] |
| rs17442756 | 0.86[ASN][1000 genomes] |
| rs17442853 | 0.86[ASN][1000 genomes] |
| rs17443112 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17458299 | 0.85[AFR][1000 genomes] |
| rs17458396 | 0.85[AFR][1000 genomes] |
| rs17458403 | 0.85[AFR][1000 genomes] |
| rs17458752 | 0.86[ASN][1000 genomes] |
| rs17458759 | 0.86[ASN][1000 genomes] |
| rs17458766 | 0.86[ASN][1000 genomes] |
| rs17465519 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17483628 | 0.84[AFR][1000 genomes] |
| rs2046929 | 0.92[AFR][1000 genomes] |
| rs2086598 | 0.85[AFR][1000 genomes] |
| rs2404574 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2708404 | 1.00[ASN][1000 genomes] |
| rs28370654 | 0.85[AFR][1000 genomes] |
| rs28370656 | 0.85[AFR][1000 genomes] |
| rs28370659 | 0.85[AFR][1000 genomes] |
| rs28370681 | 0.85[AFR][1000 genomes] |
| rs55707305 | 0.85[AFR][1000 genomes] |
| rs7305377 | 0.92[AFR][1000 genomes] |
| rs7306718 | 0.86[ASN][1000 genomes] |
| rs7308399 | 0.86[ASN][1000 genomes] |
| rs7969495 | 0.85[AFR][1000 genomes] |
| rs7974522 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7974972 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014