SNP Report

Basic Infomation

Name	rs17443112 dbSNP
Location	chr:12,40573629
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 50)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506145	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506154	1.00[JPT][hapmap]
rs1086490	1.00[JPT][hapmap]
rs11564133	1.00[JPT][hapmap];0.93[AFR][1000 genomes]
rs11564139	1.00[JPT][hapmap]
rs11564146	1.00[JPT][hapmap]
rs11564160	1.00[JPT][hapmap];0.93[AFR][1000 genomes]
rs11564194	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11564223	1.00[JPT][hapmap]
rs11564266	1.00[JPT][hapmap]
rs11564282	1.00[JPT][hapmap]
rs12312535	1.00[JPT][hapmap]
rs12426639	1.00[JPT][hapmap]
rs1365768	1.00[JPT][hapmap]
rs1365769	1.00[JPT][hapmap]
rs1482282	1.00[JPT][hapmap];0.93[AFR][1000 genomes]
rs17442108	0.93[AFR][1000 genomes]
rs17442304	1.00[JPT][hapmap];0.93[AFR][1000 genomes]
rs17442469	1.00[JPT][hapmap];0.86[AFR][1000 genomes]
rs17442742	0.86[ASN][1000 genomes]
rs17442749	0.86[ASN][1000 genomes]
rs17442756	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17442853	0.86[ASN][1000 genomes]
rs17458299	0.93[AFR][1000 genomes]
rs17458396	0.93[AFR][1000 genomes]
rs17458403	0.93[AFR][1000 genomes]
rs17458752	0.86[ASN][1000 genomes]
rs17458759	0.86[ASN][1000 genomes]
rs17458766	0.86[ASN][1000 genomes]
rs17465519	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17465540	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17483628	1.00[JPT][hapmap];0.92[AFR][1000 genomes]
rs17484493	1.00[JPT][hapmap]
rs2046929	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs2086598	0.93[AFR][1000 genomes]
rs2404574	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708404	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28370644	1.00[JPT][hapmap]
rs28370654	0.93[AFR][1000 genomes]
rs28370656	1.00[JPT][hapmap];0.93[AFR][1000 genomes]
rs28370659	1.00[JPT][hapmap];0.93[AFR][1000 genomes]
rs28370681	0.93[AFR][1000 genomes]
rs55707305	0.93[AFR][1000 genomes]
rs7305377	1.00[AFR][1000 genomes]
rs7306718	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7308399	0.86[ASN][1000 genomes]
rs7484475	1.00[JPT][hapmap]
rs7969495	1.00[JPT][hapmap];0.93[AFR][1000 genomes]
rs7974522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7974972	1.00[JPT][hapmap];0.86[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)