SNP Report
Basic Infomation
| Name | rs17489309 dbSNP |
|---|---|
| Location | chr:12,40451758 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17489267 | 0.80[AFR][1000 genomes] |
| rs17489295 | 0.86[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs17489417 | 0.80[AFR][1000 genomes] |
| rs17489522 | 0.86[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs17489583 | 0.86[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs17518141 | 0.86[YRI][hapmap] |
| rs17518148 | 0.86[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs17518155 | 0.86[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs17518176 | 0.91[YRI][hapmap] |
| rs17518322 | 0.80[AFR][1000 genomes] |
| rs17518329 | 0.86[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs17518357 | 0.80[AFR][1000 genomes] |
| rs17518392 | 0.80[AFR][1000 genomes] |
| rs17518427 | 0.86[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs28370781 | 0.85[YRI][hapmap] |
| rs58812092 | 0.80[AFR][1000 genomes] |
| rs59404097 | 0.80[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014