SNP Report
Basic Infomation
| Name | rs17489295 dbSNP |
|---|---|
| Location | chr:12,40447745 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 48)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13377779 | 1.00[AMR][1000 genomes] |
| rs17489170 | 1.00[AMR][1000 genomes] |
| rs17489267 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17489309 | 0.86[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs17489417 | 0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17489466 | 1.00[AMR][1000 genomes] |
| rs17489522 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17489583 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518141 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518148 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518155 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518176 | 1.00[YRI][hapmap] |
| rs17518190 | 1.00[AMR][1000 genomes] |
| rs17518322 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518329 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518357 | 0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518392 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518427 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370687 | 1.00[AMR][1000 genomes] |
| rs28370691 | 1.00[AMR][1000 genomes] |
| rs28370710 | 1.00[AMR][1000 genomes] |
| rs28370715 | 1.00[AMR][1000 genomes] |
| rs28370716 | 1.00[AMR][1000 genomes] |
| rs28370749 | 1.00[AMR][1000 genomes] |
| rs28370751 | 1.00[AMR][1000 genomes] |
| rs28370760 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370763 | 0.84[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370769 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370775 | 0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370781 | 0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370782 | 0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370787 | 0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370788 | 1.00[AMR][1000 genomes] |
| rs28370789 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370791 | 0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28740215 | 1.00[AMR][1000 genomes] |
| rs28740216 | 1.00[AMR][1000 genomes] |
| rs56193998 | 1.00[AMR][1000 genomes] |
| rs57966079 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58812092 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59404097 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59663144 | 1.00[AMR][1000 genomes] |
| rs60755503 | 1.00[AMR][1000 genomes] |
| rs61339615 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74088130 | 1.00[AMR][1000 genomes] |
| rs74088192 | 1.00[AMR][1000 genomes] |
| rs74089321 | 1.00[AMR][1000 genomes] |
| rs74091033 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014