SNP Report

Basic Infomation

Name	rs4768237 dbSNP
Location	chr:12,40756687
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 114)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10459265	1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs10467144	0.83[CHB][hapmap]
rs10467146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10735931	0.83[CHB][hapmap]
rs10735934	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs10748029	0.90[CHB][hapmap]
rs10748030	0.83[CHB][hapmap]
rs10748033	0.83[CHB][hapmap]
rs10748034	0.83[CHB][hapmap]
rs10784444	0.81[CHB][hapmap]
rs10784461	0.90[CHB][hapmap]
rs10784462	0.91[CHB][hapmap]
rs10784470	0.85[CHB][hapmap]
rs10784486	0.87[CEU][hapmap]
rs10784501	0.83[CHB][hapmap]
rs10784503	0.83[CHB][hapmap]
rs10784504	0.83[CHB][hapmap]
rs10784506	0.85[CHB][hapmap]
rs10784509	0.83[CHB][hapmap]
rs10784522	0.91[CHB][hapmap]
rs10784548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10784585	0.83[CEU][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs10784595	0.82[JPT][hapmap]
rs10784596	0.82[JPT][hapmap]
rs10878245	0.85[CHB][hapmap]
rs10878249	0.81[CHB][hapmap]
rs10878368	0.86[CHB][hapmap]
rs10878371	0.86[CHB][hapmap]
rs10878377	0.82[JPT][hapmap]
rs10878405	0.95[CHB][hapmap]
rs10878441	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11175769	0.90[CHB][hapmap]
rs11175784	0.90[CHB][hapmap]
rs11175845	0.91[CHB][hapmap]
rs11175847	0.90[CHB][hapmap]
rs11175862	0.86[CHB][hapmap]
rs11175911	0.91[CHB][hapmap]
rs11175922	0.91[CHB][hapmap]
rs11176013	0.86[CHB][hapmap]
rs11176030	0.91[CHB][hapmap]
rs11176495	0.82[JPT][hapmap]
rs11564148	0.91[CHB][hapmap]
rs12146857	0.86[CHB][hapmap]
rs12314982	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12367542	0.91[CHB][hapmap]
rs12369882	0.91[CHB][hapmap]
rs12426362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12820920	0.90[CHB][hapmap]
rs1365770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1427264	0.83[CHB][hapmap]
rs1427265	0.86[CHB][hapmap]
rs1427266	0.86[CHB][hapmap]
rs1491938	0.85[CHB][hapmap]
rs17443815	0.91[CHB][hapmap]
rs17444124	0.95[CHB][hapmap]
rs17466605	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17519846	0.91[CHB][hapmap]
rs1820544	0.81[JPT][hapmap]
rs1820545	0.81[JPT][hapmap]
rs1896252	0.86[CHB][hapmap]
rs1896253	0.83[CHB][hapmap]
rs1896254	0.83[CHB][hapmap]
rs2069228	0.81[CEU][hapmap]
rs2081700	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2081701	0.88[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2114568	0.83[CHB][hapmap]
rs2162469	0.83[CHB][hapmap]
rs2404580	0.85[CHB][hapmap]
rs2404840	0.81[JPT][hapmap]
rs2896975	0.81[CEU][hapmap]
rs2896982	0.92[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3761863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789328	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3886747	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4272849	0.86[CHB][hapmap]
rs4280068	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4293189	0.81[CHB][hapmap]
rs4310676	0.88[CEU][hapmap]
rs4351885	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4483664	0.88[CEU][hapmap]
rs4767969	0.83[CHB][hapmap]
rs4767973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4768229	0.83[CHB][hapmap]
rs4768230	0.90[CHB][hapmap]
rs4768236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6581667	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs6581668	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs7134408	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7137160	0.83[CHB][hapmap]
rs7137809	0.82[JPT][hapmap]
rs721711	0.83[CHB][hapmap]
rs721712	0.83[CHB][hapmap]
rs721713	0.86[CHB][hapmap]
rs7298930	0.86[CHB][hapmap]
rs7302841	0.91[CHB][hapmap]
rs7307276	0.83[CHB][hapmap]
rs7307562	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7308193	0.88[CEU][hapmap]
rs7308560	0.82[JPT][hapmap]
rs7309197	0.91[CHB][hapmap]
rs7310390	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs7954300	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7954318	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7955902	0.81[CHB][hapmap]
rs7957057	0.87[CEU][hapmap]
rs7957754	0.91[CHB][hapmap]
rs7972535	0.81[JPT][hapmap]
rs7973058	0.91[CHB][hapmap]
rs7973479	0.86[CHB][hapmap]
rs7975124	0.92[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7976715	0.89[ASN][1000 genomes]
rs954884	0.81[CHB][hapmap]
rs963243	0.81[CEU][hapmap];0.87[JPT][hapmap]
rs994798	0.82[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)