SNP Report
Name | rs6581667   dbSNP |
---|---|
Location | chr:12,40731506 |
Allele | G/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1019709 | 0.81[JPT][hapmap] |
rs10459265 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10467144 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs10467146 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs10735931 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs10735934 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10748029 | 0.90[CHB][hapmap] |
rs10748030 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs10748033 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs10748034 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs10784444 | 0.81[CHB][hapmap] |
rs10784461 | 0.90[CHB][hapmap] |
rs10784462 | 0.91[CHB][hapmap] |
rs10784470 | 0.85[CHB][hapmap] |
rs10784501 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs10784503 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs10784504 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs10784506 | 0.85[CHB][hapmap];0.81[JPT][hapmap] |
rs10784509 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs10784522 | 0.91[CHB][hapmap] |
rs10784548 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs10784595 | 0.82[JPT][hapmap] |
rs10784596 | 0.82[JPT][hapmap] |
rs10878245 | 0.85[CHB][hapmap] |
rs10878249 | 0.81[CHB][hapmap] |
rs10878368 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
rs10878371 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
rs10878405 | 0.95[CHB][hapmap] |
rs10878441 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs11175769 | 0.90[CHB][hapmap] |
rs11175784 | 0.90[CHB][hapmap] |
rs11175845 | 0.91[CHB][hapmap] |
rs11175847 | 0.90[CHB][hapmap] |
rs11175862 | 0.86[CHB][hapmap] |
rs11175911 | 0.91[CHB][hapmap] |
rs11175922 | 0.91[CHB][hapmap] |
rs11176013 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
rs11176030 | 0.91[CHB][hapmap] |
rs11176495 | 0.82[JPT][hapmap] |
rs11564148 | 0.91[CHB][hapmap] |
rs12146857 | 0.86[CHB][hapmap] |
rs12367542 | 0.91[CHB][hapmap] |
rs12369882 | 0.91[CHB][hapmap] |
rs12426362 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs12820920 | 0.90[CHB][hapmap] |
rs1427264 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs1427265 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
rs1427266 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
rs1491938 | 0.85[CHB][hapmap] |
rs17443815 | 0.91[CHB][hapmap] |
rs17444124 | 0.95[CHB][hapmap] |
rs17466605 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs17519846 | 0.91[CHB][hapmap] |
rs1820544 | 0.85[JPT][hapmap] |
rs1820545 | 0.86[JPT][hapmap] |
rs1896252 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
rs1896253 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs1896254 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs2114568 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs2114569 | 0.82[JPT][hapmap] |
rs2162469 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs2404580 | 0.85[CHB][hapmap] |
rs2404840 | 0.86[JPT][hapmap] |
rs3761863 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs3886747 | 0.95[CHB][hapmap];0.85[JPT][hapmap] |
rs4272849 | 0.86[CHB][hapmap] |
rs4293189 | 0.81[CHB][hapmap] |
rs4767969 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs4767973 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes] |
rs4768227 | 0.82[JPT][hapmap] |
rs4768229 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs4768230 | 0.90[CHB][hapmap] |
rs4768236 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
rs4768237 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
rs6581668 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7134408 | 0.90[CHB][hapmap] |
rs7137160 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs7137809 | 0.82[JPT][hapmap] |
rs721711 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs721712 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs721713 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
rs7298930 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
rs7302841 | 0.91[CHB][hapmap] |
rs7307276 | 0.83[CHB][hapmap];0.82[JPT][hapmap] |
rs7307562 | 0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
rs7308560 | 0.82[JPT][hapmap] |
rs7309197 | 0.91[CHB][hapmap] |
rs7955902 | 0.81[CHB][hapmap] |
rs7957754 | 0.91[CHB][hapmap] |
rs7972535 | 0.86[JPT][hapmap] |
rs7973058 | 0.91[CHB][hapmap] |
rs7973479 | 0.86[CHB][hapmap] |
rs7976715 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs954884 | 0.81[CHB][hapmap] |
rs994798 | 0.82[JPT][hapmap] |
Symbol | Regulation type |
---|---|
LRRK2 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014