SNP Report
Basic Infomation
| Name | rs7976715 dbSNP |
|---|---|
| Location | chr:12,40749150 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459265 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10467146 | 0.88[ASN][1000 genomes] |
| rs10735934 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10784548 | 0.88[ASN][1000 genomes] |
| rs10878441 | 0.88[ASN][1000 genomes] |
| rs12426362 | 0.88[ASN][1000 genomes] |
| rs1365770 | 0.88[ASN][1000 genomes] |
| rs17466605 | 0.88[ASN][1000 genomes] |
| rs3761863 | 0.88[ASN][1000 genomes] |
| rs3789328 | 0.88[ASN][1000 genomes] |
| rs3886747 | 0.88[ASN][1000 genomes] |
| rs4767973 | 0.90[ASN][1000 genomes] |
| rs4768236 | 0.89[ASN][1000 genomes] |
| rs4768237 | 0.89[ASN][1000 genomes] |
| rs6581667 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6581668 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7134408 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014