SNP Report

Basic Infomation

Name	rs7134408 dbSNP
Location	chr:12,40757533
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10459265	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs10467146	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735934	0.90[CHB][hapmap]
rs10784462	0.81[CHB][hapmap]
rs10784486	0.87[CEU][hapmap]
rs10784522	0.81[CHB][hapmap]
rs10784548	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784585	0.83[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs10878405	0.85[CHB][hapmap]
rs10878441	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175845	0.81[CHB][hapmap]
rs11175911	0.81[CHB][hapmap]
rs11175922	0.81[CHB][hapmap]
rs11176013	0.80[CHB][hapmap]
rs11176030	0.81[CHB][hapmap]
rs11564148	0.81[CHB][hapmap]
rs12314982	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12367542	0.81[CHB][hapmap]
rs12369882	0.81[CHB][hapmap]
rs12426362	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365770	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17443815	0.81[CHB][hapmap]
rs17444124	0.85[CHB][hapmap]
rs17466605	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519846	0.81[CHB][hapmap]
rs2069228	0.81[CEU][hapmap]
rs2081700	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2081701	0.88[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2896975	0.81[CEU][hapmap]
rs2896982	0.92[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3761863	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789328	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886747	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4280068	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4310676	0.88[CEU][hapmap]
rs4351885	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4483664	0.88[CEU][hapmap]
rs4767973	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768236	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4768237	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6581667	0.90[CHB][hapmap]
rs6581668	0.85[CHB][hapmap];0.84[YRI][hapmap]
rs7302841	0.80[CHB][hapmap]
rs7307562	0.84[CHB][hapmap]
rs7308193	0.88[CEU][hapmap]
rs7309197	0.81[CHB][hapmap]
rs7310390	0.92[CEU][hapmap];0.87[JPT][hapmap]
rs7954300	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7954318	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7957057	0.87[CEU][hapmap]
rs7957754	0.81[CHB][hapmap]
rs7973058	0.81[CHB][hapmap]
rs7975124	0.92[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7976715	0.88[ASN][1000 genomes]
rs963243	0.81[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)