SNP Report

Basic Infomation

Name	rs7310390 dbSNP
Location	chr:12,40786103
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1019709	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs10459265	0.82[JPT][hapmap]
rs10467146	0.91[CEU][hapmap];0.95[JPT][hapmap]
rs10735934	0.82[JPT][hapmap]
rs10784486	0.87[CEU][hapmap]
rs10784548	0.91[CEU][hapmap];0.95[JPT][hapmap]
rs10784585	0.91[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10784595	0.96[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs10784596	0.96[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs10878441	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs10878551	0.83[CHB][hapmap]
rs10878552	0.83[CHB][hapmap]
rs11176495	0.96[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs12314982	1.00[CEU][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12426362	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs17466605	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs1820544	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1820545	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs2069228	0.80[CEU][hapmap]
rs2081700	0.96[CEU][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2081701	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2404840	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2896975	0.80[CEU][hapmap]
rs2896982	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3761863	0.91[CEU][hapmap];0.95[JPT][hapmap]
rs3886747	0.91[CEU][hapmap];0.95[JPT][hapmap]
rs4280068	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4310676	0.88[CEU][hapmap]
rs4351885	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4483664	0.88[CEU][hapmap]
rs4767973	0.92[CEU][hapmap];0.87[JPT][hapmap]
rs4768236	0.91[CEU][hapmap];0.95[JPT][hapmap]
rs4768237	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs6581668	0.82[JPT][hapmap]
rs7134408	0.92[CEU][hapmap];0.87[JPT][hapmap]
rs7137809	0.96[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs7307562	0.81[JPT][hapmap]
rs7308193	0.88[CEU][hapmap]
rs7308560	0.91[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs7954300	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7954318	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7956721	0.83[CHB][hapmap]
rs7957057	0.87[CEU][hapmap]
rs7972535	0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7975124	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs963243	0.80[CEU][hapmap];0.83[JPT][hapmap]
rs994798	1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MUC19	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)