SNP Report
Basic Infomation
| Name | rs7957057 dbSNP |
|---|---|
| Location | chr:12,40690706 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 79)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10467144 | 0.87[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs10467146 | 0.87[CEU][hapmap] |
| rs10735931 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs10748029 | 0.85[ASN][1000 genomes] |
| rs10748030 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs10748033 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs10748034 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs10784486 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10784501 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs10784503 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs10784504 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs10784506 | 0.84[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs10784509 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs10784528 | 0.83[YRI][hapmap] |
| rs10784548 | 0.87[CEU][hapmap] |
| rs10784585 | 0.95[CEU][hapmap];0.84[TSI][hapmap] |
| rs10878290 | 0.86[ASN][1000 genomes] |
| rs10878358 | 0.85[ASN][1000 genomes] |
| rs10878368 | 0.87[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.86[ASN][1000 genomes] |
| rs10878371 | 0.87[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.86[ASN][1000 genomes] |
| rs10878377 | 0.95[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10878441 | 0.83[CEU][hapmap] |
| rs11176013 | 0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.86[ASN][1000 genomes] |
| rs12314982 | 0.87[CEU][hapmap] |
| rs12426362 | 0.87[CEU][hapmap] |
| rs1427263 | 0.86[ASW][hapmap];0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1427264 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs1427265 | 0.87[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.86[ASN][1000 genomes] |
| rs1427266 | 0.87[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.86[ASN][1000 genomes] |
| rs1427267 | 0.86[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17466605 | 0.87[CEU][hapmap] |
| rs1896252 | 0.87[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.86[ASN][1000 genomes] |
| rs1896253 | 0.87[CHB][hapmap] |
| rs1896254 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs2069228 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap] |
| rs2081700 | 0.91[CEU][hapmap] |
| rs2081701 | 0.91[CEU][hapmap] |
| rs2114568 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs2114569 | 0.82[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs2162469 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs2896975 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2896982 | 0.87[CEU][hapmap] |
| rs3761863 | 0.87[CEU][hapmap] |
| rs3886747 | 0.87[CEU][hapmap] |
| rs4280068 | 0.87[CEU][hapmap] |
| rs4310676 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4473003 | 0.86[ASW][hapmap];0.83[YRI][hapmap] |
| rs4483664 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4767969 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs4767973 | 0.87[CEU][hapmap] |
| rs4768224 | 0.93[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4768227 | 0.81[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs4768229 | 0.86[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs4768236 | 0.87[CEU][hapmap] |
| rs4768237 | 0.87[CEU][hapmap] |
| rs7134408 | 0.87[CEU][hapmap] |
| rs7137160 | 0.87[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs7137665 | 0.86[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs715402 | 0.83[YRI][hapmap] |
| rs721709 | 0.86[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs721711 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs721712 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs721713 | 0.87[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.86[ASN][1000 genomes] |
| rs7298930 | 0.87[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.86[ASN][1000 genomes] |
| rs7302503 | 0.86[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7305344 | 0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7307276 | 0.87[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs7307310 | 0.86[ASW][hapmap];0.83[YRI][hapmap] |
| rs7307562 | 0.84[CHD][hapmap] |
| rs7308193 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7310390 | 0.87[CEU][hapmap] |
| rs7488873 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7954300 | 0.87[CEU][hapmap] |
| rs7954318 | 0.87[CEU][hapmap] |
| rs7963086 | 0.83[YRI][hapmap] |
| rs7973479 | 0.82[CHB][hapmap] |
| rs7975124 | 0.86[CEU][hapmap] |
| rs7979341 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs963243 | 0.91[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Proximal transcriptional regulation |
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014