SNP Report

Basic Infomation

Name	rs3886747 dbSNP
Location	chr:12,40761951
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 114)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10459265	0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs10467144	0.81[CHB][hapmap]
rs10467146	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735931	0.81[CHB][hapmap]
rs10735934	0.95[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap]
rs10748029	0.94[CHB][hapmap]
rs10748030	0.81[CHB][hapmap]
rs10748033	0.81[CHB][hapmap]
rs10748034	0.81[CHB][hapmap]
rs10784444	0.81[CHB][hapmap]
rs10784461	0.85[CHB][hapmap]
rs10784462	0.85[CHB][hapmap]
rs10784470	0.80[CHB][hapmap]
rs10784486	0.87[CEU][hapmap]
rs10784501	0.81[CHB][hapmap]
rs10784503	0.81[CHB][hapmap]
rs10784504	0.81[CHB][hapmap]
rs10784506	0.83[CHB][hapmap]
rs10784509	0.81[CHB][hapmap]
rs10784518	0.89[ASW][hapmap]
rs10784522	0.86[CHB][hapmap]
rs10784548	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784585	0.83[CEU][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs10784595	0.81[JPT][hapmap]
rs10784596	0.81[JPT][hapmap]
rs10878245	0.81[CHB][hapmap]
rs10878368	0.81[CHB][hapmap]
rs10878371	0.81[CHB][hapmap]
rs10878377	0.86[JPT][hapmap]
rs10878405	0.90[CHB][hapmap]
rs10878441	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175769	0.85[CHB][hapmap]
rs11175784	0.84[CHB][hapmap]
rs11175845	0.85[CHB][hapmap]
rs11175847	0.85[CHB][hapmap]
rs11175862	0.80[CHB][hapmap]
rs11175911	0.85[CHB][hapmap]
rs11175922	0.85[CHB][hapmap]
rs11176013	0.81[CHB][hapmap]
rs11176030	0.86[CHB][hapmap]
rs11176495	0.81[JPT][hapmap]
rs11564148	0.86[CHB][hapmap]
rs12146857	0.81[CHB][hapmap]
rs12314982	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12367542	0.86[CHB][hapmap]
rs12369882	0.85[CHB][hapmap]
rs12426362	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12820920	0.85[CHB][hapmap]
rs1365765	0.89[ASW][hapmap]
rs1365770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1427264	0.81[CHB][hapmap]
rs1427265	0.81[CHB][hapmap]
rs1427266	0.81[CHB][hapmap]
rs1427271	0.89[ASW][hapmap]
rs1491938	0.85[CHB][hapmap]
rs17443815	0.85[CHB][hapmap]
rs17444124	0.90[CHB][hapmap]
rs17466605	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519846	0.85[CHB][hapmap]
rs1820545	0.81[JPT][hapmap]
rs1896252	0.81[CHB][hapmap]
rs1896253	0.81[CHB][hapmap]
rs1896254	0.81[CHB][hapmap]
rs2081700	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2081701	0.87[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2114568	0.81[CHB][hapmap]
rs2162469	0.81[CHB][hapmap]
rs2404580	0.81[CHB][hapmap]
rs2404840	0.81[JPT][hapmap]
rs2896982	0.91[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3761863	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789328	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789330	0.89[ASW][hapmap]
rs4272849	0.81[CHB][hapmap]
rs4280068	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4310676	0.87[CEU][hapmap]
rs4351885	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4483664	0.87[CEU][hapmap]
rs4767969	0.81[CHB][hapmap]
rs4767973	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768229	0.81[CHB][hapmap]
rs4768230	0.86[CHB][hapmap]
rs4768233	0.89[ASW][hapmap]
rs4768234	0.89[ASW][hapmap]
rs4768236	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4768237	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6581667	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs6581668	0.90[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs7134408	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7137160	0.81[CHB][hapmap]
rs7137809	0.81[JPT][hapmap]
rs721711	0.81[CHB][hapmap]
rs721712	0.81[CHB][hapmap]
rs721713	0.81[CHB][hapmap]
rs7298930	0.81[CHB][hapmap]
rs7302841	0.85[CHB][hapmap]
rs7307276	0.81[CHB][hapmap]
rs7307562	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs7308193	0.87[CEU][hapmap]
rs7308560	0.81[JPT][hapmap]
rs7309197	0.85[CHB][hapmap]
rs7310390	0.91[CEU][hapmap];0.95[JPT][hapmap]
rs7954300	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7954318	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7957057	0.87[CEU][hapmap]
rs7957754	0.85[CHB][hapmap]
rs7972535	0.81[JPT][hapmap]
rs7973058	0.86[CHB][hapmap]
rs7973479	0.85[CHB][hapmap]
rs7975124	0.91[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7976715	0.88[ASN][1000 genomes]
rs954884	0.81[CHB][hapmap]
rs963243	0.86[JPT][hapmap]
rs994798	0.81[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Proximal transcriptional regulation
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)