SNP Report

Basic Infomation

Name	rs4768230 dbSNP
Location	chr:12,40715302
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 61)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10459265	0.90[CHB][hapmap]
rs10467146	0.90[CHB][hapmap]
rs10735934	0.90[CHB][hapmap]
rs10748029	0.83[CHB][hapmap]
rs10784444	0.86[CHB][hapmap]
rs10784461	0.90[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs10784462	0.90[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs10784470	0.91[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];0.80[MEX][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10784522	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10784548	0.90[CHB][hapmap]
rs10878245	0.86[CHB][hapmap];0.95[CHD][hapmap]
rs10878249	0.90[CHB][hapmap];0.97[CHD][hapmap]
rs10878405	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs10878441	0.90[CHB][hapmap]
rs10878551	1.00[JPT][hapmap]
rs10878552	1.00[JPT][hapmap]
rs11175769	0.90[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs11175775	0.81[ASN][1000 genomes]
rs11175784	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs11175787	0.87[ASN][1000 genomes]
rs11175836	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11175845	0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs11175847	0.90[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs11175862	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11175911	0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs11175922	0.90[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs11176030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11564148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12146857	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];0.88[ASN][1000 genomes]
rs12311273	0.91[ASN][1000 genomes]
rs12367542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12369882	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs12426362	0.90[CHB][hapmap]
rs12820920	0.90[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs1491938	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs17443815	0.90[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs17444124	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17466605	0.90[CHB][hapmap]
rs17519846	0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs2404580	0.86[CHB][hapmap];0.95[CHD][hapmap]
rs35124455	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3761863	0.90[CHB][hapmap]
rs3886747	0.86[CHB][hapmap]
rs4272849	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs4293189	0.80[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4767973	0.90[CHB][hapmap]
rs4768236	0.90[CHB][hapmap]
rs4768237	0.90[CHB][hapmap]
rs6581667	0.90[CHB][hapmap]
rs6581668	0.85[CHB][hapmap]
rs7302841	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7307562	0.90[CHB][hapmap]
rs7309197	0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs732374	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs7955902	0.90[CHB][hapmap];0.95[CHD][hapmap]
rs7956721	1.00[JPT][hapmap]
rs7957754	0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs7962011	0.89[ASN][1000 genomes]
rs7973058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7973479	0.90[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs954884	0.86[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)