SNP Report

Basic Infomation

Name	rs732374 dbSNP
Location	chr:12,40643468
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 48)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10748014	0.85[JPT][hapmap];0.84[AFR][1000 genomes]
rs10784444	0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs10784461	0.90[CHB][hapmap];0.89[CHD][hapmap];0.90[ASN][1000 genomes]
rs10784462	0.90[CHB][hapmap];0.90[ASN][1000 genomes]
rs10784470	0.95[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs10878222	0.84[AFR][1000 genomes]
rs10878245	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10878249	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10878262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878405	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs11175656	0.85[JPT][hapmap]
rs11175769	0.90[CHB][hapmap];0.90[CHD][hapmap];0.89[ASN][1000 genomes]
rs11175775	0.87[ASN][1000 genomes]
rs11175784	0.89[CHB][hapmap];0.89[ASN][1000 genomes]
rs11175787	0.87[ASN][1000 genomes]
rs11175836	0.88[ASN][1000 genomes]
rs11175845	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs11175847	0.90[CHB][hapmap];0.88[CHD][hapmap];0.87[ASN][1000 genomes]
rs11175862	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs11175911	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs11175922	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs11176030	0.90[CHB][hapmap]
rs11564148	0.90[CHB][hapmap]
rs12146857	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs12367542	0.90[CHB][hapmap]
rs12369882	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs12371502	0.99[ASN][1000 genomes]
rs12820920	0.90[CHB][hapmap];0.88[CHD][hapmap];0.85[ASN][1000 genomes]
rs1491938	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17443815	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs17444124	0.84[CHB][hapmap]
rs17519846	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs2404580	0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs2404581	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2638245	0.84[JPT][hapmap]
rs2708494	0.84[JPT][hapmap]
rs35124455	0.80[ASN][1000 genomes]
rs4272849	0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs4293189	0.90[CHD][hapmap];0.89[ASN][1000 genomes]
rs4768230	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs7132171	0.85[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7309197	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs7955902	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957754	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs7962011	0.82[ASN][1000 genomes]
rs7973058	0.90[CHB][hapmap]
rs7973479	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs954884	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MUC19	Distal transcriptional regulation
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)