SNP Report
Basic Infomation
| Name | rs12371502 dbSNP |
|---|---|
| Location | chr:12,40644305 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10784444 | 0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10784461 | 0.91[ASN][1000 genomes] |
| rs10784462 | 0.91[ASN][1000 genomes] |
| rs10784470 | 0.87[ASN][1000 genomes] |
| rs10878245 | 1.00[ASN][1000 genomes] |
| rs10878249 | 0.99[ASN][1000 genomes] |
| rs10878262 | 0.99[ASN][1000 genomes] |
| rs11175769 | 0.90[ASN][1000 genomes] |
| rs11175775 | 0.87[ASN][1000 genomes] |
| rs11175784 | 0.90[ASN][1000 genomes] |
| rs11175787 | 0.88[ASN][1000 genomes] |
| rs11175836 | 0.87[ASN][1000 genomes] |
| rs11175845 | 0.88[ASN][1000 genomes] |
| rs11175847 | 0.88[ASN][1000 genomes] |
| rs11175862 | 0.87[ASN][1000 genomes] |
| rs11175911 | 0.88[ASN][1000 genomes] |
| rs11175922 | 0.85[ASN][1000 genomes] |
| rs12146857 | 0.87[ASN][1000 genomes] |
| rs12369882 | 0.87[ASN][1000 genomes] |
| rs12820920 | 0.85[ASN][1000 genomes] |
| rs1491938 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17443815 | 0.85[ASN][1000 genomes] |
| rs17519846 | 0.88[ASN][1000 genomes] |
| rs2404580 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2404581 | 0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4272849 | 0.88[ASN][1000 genomes] |
| rs4293189 | 0.90[ASN][1000 genomes] |
| rs7132171 | 0.81[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7309197 | 0.88[ASN][1000 genomes] |
| rs732374 | 0.99[ASN][1000 genomes] |
| rs7955902 | 0.99[ASN][1000 genomes] |
| rs7957754 | 0.88[ASN][1000 genomes] |
| rs7962011 | 0.83[ASN][1000 genomes] |
| rs7973479 | 0.85[ASN][1000 genomes] |
| rs954884 | 0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CREB3L4 | Distal transcriptional regulation |
| SLC39A1 | Distal transcriptional regulation |
| MUC19 | Distal transcriptional regulation |
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014