SNP Report
Name | rs2404581   dbSNP |
---|---|
Location | chr:12,40639901 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10748014 | 0.80[JPT][hapmap] |
rs10784444 | 0.87[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.87[ASN][1000 genomes] |
rs10784461 | 0.86[CHB][hapmap];0.84[YRI][hapmap] |
rs10784462 | 0.87[CHB][hapmap];0.84[YRI][hapmap] |
rs10784470 | 0.82[CHB][hapmap] |
rs10878245 | 0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
rs10878249 | 0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
rs10878262 | 0.86[ASN][1000 genomes] |
rs10878368 | 0.81[CHB][hapmap] |
rs10878371 | 0.81[CHB][hapmap] |
rs10878405 | 0.82[CHB][hapmap] |
rs11175656 | 0.80[JPT][hapmap] |
rs11175769 | 0.86[CHB][hapmap];0.84[YRI][hapmap] |
rs11175784 | 0.86[CHB][hapmap];0.85[YRI][hapmap] |
rs11175845 | 0.87[CHB][hapmap] |
rs11175847 | 0.86[CHB][hapmap] |
rs11175862 | 0.87[CHB][hapmap] |
rs11175911 | 0.87[CHB][hapmap] |
rs11175922 | 0.87[CHB][hapmap] |
rs11176013 | 0.81[CHB][hapmap] |
rs12146857 | 0.83[CHB][hapmap] |
rs12369882 | 0.87[CHB][hapmap] |
rs12371502 | 0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12820920 | 0.86[CHB][hapmap] |
rs1427265 | 0.81[CHB][hapmap] |
rs1427266 | 0.81[CHB][hapmap] |
rs1491938 | 0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs17443815 | 0.87[CHB][hapmap] |
rs17444124 | 0.87[CHB][hapmap] |
rs17519846 | 0.87[CHB][hapmap] |
rs1896252 | 0.81[CHB][hapmap] |
rs2404580 | 0.92[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4272849 | 0.82[CHB][hapmap] |
rs4293189 | 0.84[YRI][hapmap] |
rs7132171 | 0.83[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.83[ASN][1000 genomes] |
rs721713 | 0.81[CHB][hapmap] |
rs7298930 | 0.81[CHB][hapmap] |
rs7309197 | 0.87[CHB][hapmap] |
rs732374 | 0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
rs7955902 | 0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
rs7957754 | 0.87[CHB][hapmap] |
rs7973479 | 0.86[CHB][hapmap] |
rs954884 | 0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.85[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
LRRK2 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014