SNP Report

Basic Infomation

Name	rs2404581 dbSNP
Location	chr:12,40639901
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 43)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10748014	0.80[JPT][hapmap]
rs10784444	0.87[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10784461	0.86[CHB][hapmap];0.84[YRI][hapmap]
rs10784462	0.87[CHB][hapmap];0.84[YRI][hapmap]
rs10784470	0.82[CHB][hapmap]
rs10878245	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10878249	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10878262	0.86[ASN][1000 genomes]
rs10878368	0.81[CHB][hapmap]
rs10878371	0.81[CHB][hapmap]
rs10878405	0.82[CHB][hapmap]
rs11175656	0.80[JPT][hapmap]
rs11175769	0.86[CHB][hapmap];0.84[YRI][hapmap]
rs11175784	0.86[CHB][hapmap];0.85[YRI][hapmap]
rs11175845	0.87[CHB][hapmap]
rs11175847	0.86[CHB][hapmap]
rs11175862	0.87[CHB][hapmap]
rs11175911	0.87[CHB][hapmap]
rs11175922	0.87[CHB][hapmap]
rs11176013	0.81[CHB][hapmap]
rs12146857	0.83[CHB][hapmap]
rs12369882	0.87[CHB][hapmap]
rs12371502	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12820920	0.86[CHB][hapmap]
rs1427265	0.81[CHB][hapmap]
rs1427266	0.81[CHB][hapmap]
rs1491938	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17443815	0.87[CHB][hapmap]
rs17444124	0.87[CHB][hapmap]
rs17519846	0.87[CHB][hapmap]
rs1896252	0.81[CHB][hapmap]
rs2404580	0.92[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4272849	0.82[CHB][hapmap]
rs4293189	0.84[YRI][hapmap]
rs7132171	0.83[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.83[ASN][1000 genomes]
rs721713	0.81[CHB][hapmap]
rs7298930	0.81[CHB][hapmap]
rs7309197	0.87[CHB][hapmap]
rs732374	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7955902	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7957754	0.87[CHB][hapmap]
rs7973479	0.86[CHB][hapmap]
rs954884	0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)