SNP Report

Basic Infomation

Name	rs10878405 dbSNP
Location	chr:12,40742254
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 93)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10459265	0.95[CHB][hapmap]
rs10467144	0.82[CHB][hapmap]
rs10467146	0.95[CHB][hapmap]
rs10735931	0.82[CHB][hapmap]
rs10735934	0.95[CHB][hapmap]
rs10748029	0.89[CHB][hapmap]
rs10748030	0.82[CHB][hapmap]
rs10748033	0.82[CHB][hapmap]
rs10748034	0.82[CHB][hapmap]
rs10784444	0.91[CHB][hapmap]
rs10784461	0.95[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap]
rs10784462	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10784470	0.90[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.87[JPT][hapmap];0.88[MKK][hapmap];0.82[ASN][1000 genomes]
rs10784501	0.82[CHB][hapmap]
rs10784503	0.82[CHB][hapmap]
rs10784504	0.82[CHB][hapmap]
rs10784506	0.84[CHB][hapmap]
rs10784509	0.82[CHB][hapmap]
rs10784522	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784548	0.95[CHB][hapmap]
rs10878245	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs10878249	0.85[CHB][hapmap];0.92[CHD][hapmap]
rs10878368	0.82[CHB][hapmap]
rs10878371	0.82[CHB][hapmap]
rs10878441	0.95[CHB][hapmap]
rs10878551	1.00[JPT][hapmap]
rs10878552	1.00[JPT][hapmap]
rs11175769	0.95[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap]
rs11175784	0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs11175787	0.83[ASN][1000 genomes]
rs11175836	0.82[ASN][1000 genomes]
rs11175845	0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs11175847	0.95[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs11175862	0.90[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11175911	0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs11175922	0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs11176013	0.82[CHB][hapmap]
rs11176030	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11564148	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12146857	0.90[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs12311273	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12367542	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12368227	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12369882	0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12426362	0.95[CHB][hapmap]
rs12820920	0.95[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs1427264	0.82[CHB][hapmap]
rs1427265	0.82[CHB][hapmap]
rs1427266	0.82[CHB][hapmap]
rs1491938	0.90[CHB][hapmap];0.88[CHD][hapmap]
rs17443815	0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs17444124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17466605	0.95[CHB][hapmap]
rs17519846	0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs1896252	0.82[CHB][hapmap]
rs1896253	0.82[CHB][hapmap]
rs1896254	0.82[CHB][hapmap]
rs2114568	0.82[CHB][hapmap]
rs2162469	0.82[CHB][hapmap]
rs2404580	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs2404581	0.82[CHB][hapmap]
rs35124455	0.84[ASN][1000 genomes]
rs3761863	0.95[CHB][hapmap]
rs3886747	0.90[CHB][hapmap]
rs4272849	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs4293189	0.85[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap]
rs4767969	0.82[CHB][hapmap]
rs4767973	0.95[CHB][hapmap]
rs4768229	0.82[CHB][hapmap]
rs4768230	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs4768236	0.95[CHB][hapmap]
rs4768237	0.95[CHB][hapmap]
rs6581667	0.95[CHB][hapmap]
rs6581668	0.90[CHB][hapmap]
rs7132171	0.80[CHB][hapmap]
rs7134408	0.85[CHB][hapmap]
rs7137160	0.82[CHB][hapmap]
rs721711	0.82[CHB][hapmap]
rs721712	0.82[CHB][hapmap]
rs721713	0.82[CHB][hapmap]
rs7298930	0.82[CHB][hapmap]
rs7302841	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7307276	0.82[CHB][hapmap]
rs7307562	0.84[CHB][hapmap]
rs7309197	0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs732374	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs7955902	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs7956721	1.00[JPT][hapmap];0.85[MEX][hapmap]
rs7957754	0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs7962011	0.82[ASN][1000 genomes]
rs7973058	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7973479	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs954884	0.91[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Proximal transcriptional regulation
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
PDZRN4	SCAN
HORMAD1	SCAN