SNP Report

Basic Infomation

Name	rs7132171 dbSNP
Location	chr:12,40649749
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10784444	0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10784461	0.85[CHB][hapmap];0.83[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10784462	0.86[CHB][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10784470	0.89[ASN][1000 genomes]
rs10878245	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.95[ASN][1000 genomes]
rs10878249	0.85[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs10878262	0.95[ASN][1000 genomes]
rs10878405	0.80[CHB][hapmap]
rs11175769	0.85[CHB][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11175775	0.88[ASN][1000 genomes]
rs11175784	0.90[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11175787	0.89[ASN][1000 genomes]
rs11175836	0.89[ASN][1000 genomes]
rs11175845	0.86[CHB][hapmap];0.81[YRI][hapmap];0.89[ASN][1000 genomes]
rs11175847	0.85[CHB][hapmap];0.89[ASN][1000 genomes]
rs11175862	0.81[CHB][hapmap];0.89[ASN][1000 genomes]
rs11175911	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs11175922	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs12146857	0.81[CHB][hapmap];0.89[ASN][1000 genomes]
rs12369882	0.86[CHB][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes]
rs12371502	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12820920	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs1491938	0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17443815	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs17444124	0.81[CHB][hapmap]
rs17519846	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs2404580	0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2404581	0.83[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.83[ASN][1000 genomes]
rs4272849	0.82[CHB][hapmap];0.81[YRI][hapmap];0.89[ASN][1000 genomes]
rs4293189	0.95[CHB][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7309197	0.86[CHB][hapmap];0.84[YRI][hapmap];0.89[ASN][1000 genomes]
rs732374	0.85[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7955902	0.85[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7957754	0.86[CHB][hapmap];0.81[YRI][hapmap];0.89[ASN][1000 genomes]
rs7962011	0.83[ASN][1000 genomes]
rs7973479	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs954884	0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MUC19	Distal transcriptional regulation
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)