SNP Report

Basic Infomation

Name	rs10878245 dbSNP
Location	chr:12,40631791
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 63)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10459265	0.85[CHB][hapmap]
rs10467146	0.85[CHB][hapmap]
rs10735934	0.85[CHB][hapmap]
rs10748014	0.84[JPT][hapmap]
rs10784444	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784461	0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs10784462	0.95[CHB][hapmap];0.91[ASN][1000 genomes]
rs10784470	0.90[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs10784522	0.86[CHB][hapmap]
rs10784548	0.85[CHB][hapmap]
rs10878222	0.84[JPT][hapmap]
rs10878249	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10878262	0.99[ASN][1000 genomes]
rs10878405	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs10878441	0.85[CHB][hapmap]
rs11175656	0.84[JPT][hapmap]
rs11175769	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[ASN][1000 genomes]
rs11175775	0.87[ASN][1000 genomes]
rs11175784	0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs11175787	0.88[ASN][1000 genomes]
rs11175836	0.87[ASN][1000 genomes]
rs11175845	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs11175847	0.95[CHB][hapmap];0.97[CHD][hapmap];0.88[ASN][1000 genomes]
rs11175862	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs11175911	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs11175922	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs11176030	0.86[CHB][hapmap]
rs11564148	0.86[CHB][hapmap]
rs12146857	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs12367542	0.86[CHB][hapmap]
rs12369882	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs12371502	1.00[ASN][1000 genomes]
rs12426362	0.85[CHB][hapmap]
rs12820920	0.95[CHB][hapmap];0.97[CHD][hapmap];0.85[ASN][1000 genomes]
rs1491938	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs17443815	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs17444124	0.90[CHB][hapmap]
rs17466605	0.85[CHB][hapmap]
rs17519846	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs2404580	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2404581	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2638245	0.84[JPT][hapmap]
rs2708494	0.83[JPT][hapmap]
rs3761863	0.85[CHB][hapmap]
rs3886747	0.81[CHB][hapmap]
rs4272849	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs4293189	0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[ASN][1000 genomes]
rs4767973	0.85[CHB][hapmap]
rs4768230	0.86[CHB][hapmap];0.95[CHD][hapmap]
rs4768236	0.85[CHB][hapmap]
rs4768237	0.85[CHB][hapmap]
rs6581667	0.85[CHB][hapmap]
rs6581668	0.81[CHB][hapmap]
rs7132171	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.95[ASN][1000 genomes]
rs7302841	0.86[CHB][hapmap]
rs7309197	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs732374	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7955902	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7957754	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs7962011	0.83[ASN][1000 genomes]
rs7973058	0.86[CHB][hapmap]
rs7973479	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs954884	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
CLNS1A	SCAN
CXCR7	SCAN