SNP Report
Name | rs10784462   dbSNP |
---|---|
Location | chr:12,40657771 |
Allele | C/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10459265 | 0.91[CHB][hapmap] |
rs10467146 | 0.90[CHB][hapmap] |
rs10735934 | 0.90[CHB][hapmap] |
rs10784444 | 0.91[CHB][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes] |
rs10784461 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10784470 | 0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes] |
rs10784522 | 0.91[CHB][hapmap] |
rs10784548 | 0.90[CHB][hapmap] |
rs10878245 | 0.95[CHB][hapmap];0.91[ASN][1000 genomes] |
rs10878249 | 0.90[CHB][hapmap];0.90[ASN][1000 genomes] |
rs10878262 | 0.90[ASN][1000 genomes] |
rs10878405 | 0.95[CHB][hapmap];0.82[JPT][hapmap] |
rs10878441 | 0.90[CHB][hapmap] |
rs11175769 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11175775 | 0.95[ASN][1000 genomes] |
rs11175784 | 0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11175787 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11175836 | 0.96[ASN][1000 genomes] |
rs11175845 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11175847 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11175862 | 0.95[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes] |
rs11175911 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11175922 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11176030 | 0.91[CHB][hapmap];0.83[ASN][1000 genomes] |
rs11564148 | 0.91[CHB][hapmap];0.86[ASN][1000 genomes] |
rs12146857 | 0.95[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes] |
rs12367542 | 0.91[CHB][hapmap];0.83[ASN][1000 genomes] |
rs12369882 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12371502 | 0.91[ASN][1000 genomes] |
rs12426362 | 0.91[CHB][hapmap] |
rs12820920 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1491938 | 0.95[CHB][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes] |
rs17443815 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs17444124 | 0.86[CEU][hapmap];0.95[CHB][hapmap];0.83[ASN][1000 genomes] |
rs17466605 | 0.91[CHB][hapmap] |
rs17519846 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2404580 | 0.95[CHB][hapmap];0.87[YRI][hapmap];0.90[ASN][1000 genomes] |
rs2404581 | 0.87[CHB][hapmap];0.84[YRI][hapmap] |
rs35124455 | 0.86[ASN][1000 genomes] |
rs3761863 | 0.90[CHB][hapmap] |
rs3886747 | 0.85[CHB][hapmap] |
rs4272849 | 0.86[CEU][hapmap];0.95[CHB][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4293189 | 0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4767973 | 0.90[CHB][hapmap] |
rs4768230 | 0.90[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs4768236 | 0.90[CHB][hapmap] |
rs4768237 | 0.91[CHB][hapmap] |
rs6581667 | 0.91[CHB][hapmap] |
rs6581668 | 0.86[CHB][hapmap] |
rs7132171 | 0.86[CHB][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.92[ASN][1000 genomes] |
rs7134408 | 0.81[CHB][hapmap] |
rs7302841 | 0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes] |
rs7309197 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs732374 | 0.90[CHB][hapmap];0.90[ASN][1000 genomes] |
rs7955902 | 0.90[CHB][hapmap];0.90[ASN][1000 genomes] |
rs7956721 | 0.82[JPT][hapmap] |
rs7957754 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7962011 | 0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7973058 | 0.91[CHB][hapmap];0.86[ASN][1000 genomes] |
rs7973479 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs954884 | 0.91[CHB][hapmap];0.88[YRI][hapmap];0.90[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
LRRK2 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014