SNP Report
Basic Infomation
| Name | rs7956721 dbSNP |
|---|---|
| Location | chr:12,40786280 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10784461 | 0.81[JPT][hapmap] |
| rs10784462 | 0.82[JPT][hapmap] |
| rs10784470 | 0.87[JPT][hapmap] |
| rs10784522 | 1.00[JPT][hapmap] |
| rs10784595 | 0.87[CHB][hapmap] |
| rs10784596 | 0.87[CHB][hapmap] |
| rs10878405 | 1.00[JPT][hapmap];0.85[MEX][hapmap] |
| rs10878551 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10878552 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11175769 | 0.82[JPT][hapmap] |
| rs11175784 | 0.88[JPT][hapmap] |
| rs11175845 | 0.88[JPT][hapmap] |
| rs11175847 | 0.88[JPT][hapmap] |
| rs11175862 | 0.88[JPT][hapmap] |
| rs11175911 | 0.88[JPT][hapmap] |
| rs11175922 | 0.88[JPT][hapmap] |
| rs11176030 | 1.00[JPT][hapmap] |
| rs11176495 | 0.87[CHB][hapmap] |
| rs11564148 | 1.00[JPT][hapmap] |
| rs12146857 | 0.88[JPT][hapmap] |
| rs12367542 | 1.00[JPT][hapmap] |
| rs12369882 | 0.88[JPT][hapmap] |
| rs12820920 | 0.88[JPT][hapmap] |
| rs17443815 | 0.88[JPT][hapmap] |
| rs17444124 | 1.00[JPT][hapmap] |
| rs17519846 | 0.88[JPT][hapmap] |
| rs1820544 | 0.86[CHB][hapmap];0.80[GIH][hapmap] |
| rs2404840 | 0.83[CHB][hapmap] |
| rs4293189 | 0.82[JPT][hapmap] |
| rs4768230 | 1.00[JPT][hapmap] |
| rs7137809 | 0.87[CHB][hapmap] |
| rs7302841 | 1.00[JPT][hapmap] |
| rs7308560 | 0.82[CHB][hapmap] |
| rs7309197 | 0.88[JPT][hapmap] |
| rs7310390 | 0.83[CHB][hapmap] |
| rs7957367 | 1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7957754 | 0.88[JPT][hapmap] |
| rs7972535 | 0.86[CHB][hapmap] |
| rs7973058 | 1.00[JPT][hapmap] |
| rs7973479 | 0.82[JPT][hapmap] |
| rs994798 | 0.86[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MUC19 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014