SNP Report

Basic Infomation

Name	rs2404840 dbSNP
Location	chr:12,40803788
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1019709	0.82[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.87[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10459265	0.86[JPT][hapmap]
rs10467146	0.81[JPT][hapmap]
rs10735934	0.86[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs10784548	0.81[JPT][hapmap]
rs10784585	0.83[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10784595	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10784596	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10878441	0.81[JPT][hapmap]
rs10878551	0.83[CHB][hapmap]
rs10878552	0.83[CHB][hapmap]
rs11176495	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12426362	0.81[JPT][hapmap]
rs17466605	0.81[JPT][hapmap]
rs1820544	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1820545	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2081700	0.94[ASN][1000 genomes]
rs2081701	0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs2896982	0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs3761863	0.81[JPT][hapmap]
rs3886747	0.81[JPT][hapmap]
rs4280068	0.94[ASN][1000 genomes]
rs4351885	0.94[ASN][1000 genomes]
rs4768236	0.81[JPT][hapmap]
rs4768237	0.81[JPT][hapmap]
rs6581667	0.86[JPT][hapmap]
rs6581668	0.86[JPT][hapmap]
rs7137809	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7307562	0.86[JPT][hapmap]
rs7308560	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7310390	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7954300	0.94[ASN][1000 genomes]
rs7954318	0.94[ASN][1000 genomes]
rs7956721	0.83[CHB][hapmap]
rs7972535	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7975124	0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs994798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MUC19	Distal transcriptional regulation
ENSG00000258167	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)