SNP Report

Basic Infomation

Name	rs7307562 dbSNP
Location	chr:12,40724960
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 88)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1019709	0.81[JPT][hapmap]
rs10459265	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10467144	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10467146	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs10735931	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10735934	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10748029	0.82[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs10748030	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10748033	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10748034	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10784470	0.84[CHB][hapmap]
rs10784486	0.84[CHD][hapmap]
rs10784501	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10784503	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10784504	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10784506	0.89[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs10784509	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10784548	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs10784595	0.86[JPT][hapmap]
rs10784596	0.86[JPT][hapmap]
rs10878358	0.91[ASN][1000 genomes]
rs10878368	0.90[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10878371	0.90[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10878377	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs10878405	0.84[CHB][hapmap]
rs10878441	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs11175862	0.89[CHB][hapmap]
rs11176013	0.90[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs11176030	0.90[CHB][hapmap]
rs11176495	0.86[JPT][hapmap]
rs11564148	0.90[CHB][hapmap]
rs12146857	0.84[CHB][hapmap]
rs12367542	0.90[CHB][hapmap]
rs12426362	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1427263	0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs1427264	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1427265	0.90[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1427266	0.90[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1427267	0.81[CHB][hapmap];0.88[CHD][hapmap];0.84[ASN][1000 genomes]
rs17444124	0.84[CHB][hapmap]
rs17466605	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1820544	0.86[JPT][hapmap]
rs1820545	0.86[JPT][hapmap]
rs1896252	0.90[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1896253	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs1896254	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2069228	0.81[CHB][hapmap]
rs2081701	0.81[JPT][hapmap]
rs2114568	0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs2114569	0.85[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2162469	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2404840	0.86[JPT][hapmap]
rs2896975	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs2896982	0.81[JPT][hapmap]
rs3761863	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs3886747	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs4767969	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs4767973	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4768224	0.84[CHD][hapmap]
rs4768227	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs4768229	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs4768230	0.90[CHB][hapmap]
rs4768236	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs4768237	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs6581667	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6581668	0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7134408	0.84[CHB][hapmap]
rs7137160	0.90[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7137665	0.81[CHB][hapmap];0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs7137809	0.86[JPT][hapmap]
rs721709	0.81[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs721711	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs721712	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs721713	0.90[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7298930	0.90[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7302503	0.81[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs7302841	0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs7305344	0.81[CHB][hapmap]
rs7307276	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7308560	0.86[JPT][hapmap]
rs7310390	0.81[JPT][hapmap]
rs7957057	0.84[CHD][hapmap]
rs7972535	0.86[JPT][hapmap]
rs7973058	0.90[CHB][hapmap]
rs7973479	0.84[CHB][hapmap]
rs7975124	0.81[JPT][hapmap]
rs963243	0.85[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs994798	0.86[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)