SNP Report

Basic Infomation

Name	rs1019709 dbSNP
Location	chr:12,40802150
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10459265	0.81[JPT][hapmap]
rs10735934	0.81[JPT][hapmap]
rs10784585	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs10784595	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10784596	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11176495	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1820544	0.84[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1820545	0.94[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2081700	0.82[ASN][1000 genomes]
rs2081701	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs2404840	0.82[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.87[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2896982	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs4280068	0.82[ASN][1000 genomes]
rs4351885	0.82[ASN][1000 genomes]
rs6581667	0.81[JPT][hapmap]
rs6581668	0.81[JPT][hapmap]
rs7137809	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7307562	0.81[JPT][hapmap]
rs7308560	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7310390	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7954300	0.82[ASN][1000 genomes]
rs7954318	0.82[ASN][1000 genomes]
rs7972535	0.86[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7975124	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs994798	0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000258167	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)