SNP Report

Basic Infomation

Name	rs2069228 dbSNP
Location	chr:12,40705158
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 68)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10467144	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10735931	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10748029	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10748030	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10748033	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10748034	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10784486	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs10784501	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10784503	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10784504	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10784506	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs10784509	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10784528	0.94[YRI][hapmap]
rs10784585	0.87[CEU][hapmap]
rs10878368	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10878371	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10878377	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10878441	0.82[CHB][hapmap]
rs11176013	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12314982	0.80[CEU][hapmap]
rs12426362	0.81[CEU][hapmap]
rs1427263	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs1427264	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1427265	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1427266	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1427267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17466605	0.81[CEU][hapmap]
rs1896252	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1896253	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1896254	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2081700	0.84[CEU][hapmap]
rs2081701	0.84[CEU][hapmap]
rs2114568	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2114569	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs2162469	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2896975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2896982	0.80[CEU][hapmap]
rs4280068	0.80[CEU][hapmap]
rs4310676	0.92[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap]
rs4473003	0.94[YRI][hapmap]
rs4483664	0.92[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap]
rs4767969	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs4767973	0.81[CEU][hapmap]
rs4768224	0.83[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs4768227	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs4768229	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs4768237	0.81[CEU][hapmap]
rs7134408	0.81[CEU][hapmap]
rs7137160	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7137665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs715402	0.94[YRI][hapmap]
rs721709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs721711	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs721712	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs721713	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7298930	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7302503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7305344	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7307276	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7307310	0.94[YRI][hapmap]
rs7307562	0.81[CHB][hapmap]
rs7308193	0.92[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap]
rs7310390	0.80[CEU][hapmap]
rs7954300	0.80[CEU][hapmap]
rs7954318	0.80[CEU][hapmap]
rs7957057	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs7963086	0.94[YRI][hapmap]
rs963243	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Proximal transcriptional regulation
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)