SNP Report

Basic Infomation

Name	rs4473003 dbSNP
Location	chr:12,40681057
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506148	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs10784486	0.81[ASW][hapmap]
rs10784528	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10878291	0.82[AMR][1000 genomes]
rs11564115	0.85[CHB][hapmap];0.83[CHD][hapmap];0.86[ASN][1000 genomes]
rs1388596	0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs1427259	0.88[CEU][hapmap]
rs1427261	0.88[CEU][hapmap];0.86[TSI][hapmap]
rs1427263	0.86[ASW][hapmap];0.94[YRI][hapmap]
rs1427267	0.86[ASW][hapmap];0.94[YRI][hapmap]
rs1472117	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs1491939	0.95[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs17484286	0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs1816207	0.88[CEU][hapmap]
rs1817817	0.83[ASN][1000 genomes]
rs1907634	0.83[ASN][1000 genomes]
rs2069228	0.94[YRI][hapmap]
rs2131088	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs2201144	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs2708436	0.84[ASN][1000 genomes]
rs2708437	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs2708438	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs2708441	0.83[ASN][1000 genomes]
rs2723268	0.87[ASN][1000 genomes]
rs2723269	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs2896975	0.94[YRI][hapmap]
rs3861083	0.88[CEU][hapmap]
rs4099579	0.88[CEU][hapmap]
rs4465428	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4767971	0.89[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4767972	0.80[CEU][hapmap]
rs4768224	0.81[ASW][hapmap]
rs4768238	0.90[EUR][1000 genomes]
rs6581723	0.86[TSI][hapmap]
rs7131694	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7134572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7137665	0.86[ASW][hapmap];0.93[YRI][hapmap]
rs715402	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs721709	0.86[ASW][hapmap];0.94[YRI][hapmap]
rs7302503	0.86[ASW][hapmap];0.94[YRI][hapmap]
rs7305344	0.94[YRI][hapmap]
rs7307310	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7957057	0.86[ASW][hapmap];0.83[YRI][hapmap]
rs7962370	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs7963086	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs963243	0.88[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)