SNP Report

Basic Infomation

Name	rs11564115 dbSNP
Location	chr:12,40630639
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506148	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10878123	1.00[JPT][hapmap]
rs10878208	0.83[JPT][hapmap]
rs11175256	1.00[JPT][hapmap]
rs11175332	0.95[JPT][hapmap]
rs11175371	0.95[JPT][hapmap]
rs11175401	1.00[JPT][hapmap]
rs11175405	0.89[JPT][hapmap]
rs11175422	1.00[JPT][hapmap]
rs11175558	0.95[JPT][hapmap]
rs1388596	0.90[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs1472117	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1491924	1.00[JPT][hapmap]
rs1491939	0.90[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs1491942	0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs17443199	0.89[JPT][hapmap]
rs17484286	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs1817817	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1907634	0.94[ASN][1000 genomes]
rs2046931	0.90[JPT][hapmap]
rs2131088	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2201144	0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2638244	0.90[JPT][hapmap]
rs2638268	0.90[JPT][hapmap]
rs2638270	0.95[JPT][hapmap]
rs2638271	0.90[JPT][hapmap]
rs2708436	0.95[ASN][1000 genomes]
rs2708437	0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs2708438	0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs2708441	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2723268	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2723269	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28365179	0.94[JPT][hapmap]
rs4473003	0.85[CHB][hapmap];0.83[CHD][hapmap];0.86[ASN][1000 genomes]
rs7134572	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs7310104	0.90[JPT][hapmap]
rs949640	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)