SNP Report

Basic Infomation

Name	rs10878123 dbSNP
Location	chr:12,40532533
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506148	0.85[CHB][hapmap]
rs10784340	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10877913	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[MEX][hapmap];0.84[EUR][1000 genomes]
rs10877955	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10877971	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10878208	0.83[JPT][hapmap]
rs11174831	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11174928	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs11175102	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11175103	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs11175256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11175332	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11175371	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11175401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11175405	0.89[JPT][hapmap]
rs11175422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11175540	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11175558	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs11564115	1.00[JPT][hapmap]
rs12372213	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1388596	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs1472117	1.00[JPT][hapmap]
rs1491924	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1491939	0.84[JPT][hapmap]
rs1491942	0.95[JPT][hapmap]
rs17442157	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17443199	0.85[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs17458156	0.86[EUR][1000 genomes]
rs17458613	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17518546	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2046931	0.90[JPT][hapmap]
rs2131088	1.00[JPT][hapmap]
rs2201144	1.00[ASW][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs2638244	0.90[JPT][hapmap]
rs2638268	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2638270	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2638271	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2708437	1.00[ASW][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs2708438	1.00[ASW][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs2708478	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2723269	1.00[JPT][hapmap]
rs28365172	0.86[EUR][1000 genomes]
rs28365179	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28365683	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs28370683	0.86[EUR][1000 genomes]
rs72031906	0.87[ASN][1000 genomes]
rs72644819	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7310104	0.90[JPT][hapmap]
rs949640	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
LRRK2	Pritchard
LRRK2	Pritchard
LRRK2	GTEx