SNP Report
Basic Infomation
| Name | rs17518546 dbSNP |
|---|---|
| Location | chr:12,40504052 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10784340 | 0.82[EUR][1000 genomes] |
| rs10877913 | 0.84[EUR][1000 genomes] |
| rs10877955 | 0.86[EUR][1000 genomes] |
| rs10877971 | 0.86[EUR][1000 genomes] |
| rs10878123 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11174831 | 0.86[EUR][1000 genomes] |
| rs11174928 | 0.86[EUR][1000 genomes] |
| rs11175102 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11175103 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11175256 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11175332 | 0.83[ASN][1000 genomes] |
| rs11175371 | 0.84[ASN][1000 genomes] |
| rs11175401 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11175422 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11175540 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12372213 | 0.86[EUR][1000 genomes] |
| rs1491924 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17442157 | 0.86[EUR][1000 genomes] |
| rs17458156 | 0.86[EUR][1000 genomes] |
| rs17458613 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2638270 | 0.84[ASN][1000 genomes] |
| rs2708478 | 0.80[EUR][1000 genomes] |
| rs28365172 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs28365179 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs28365683 | 0.86[EUR][1000 genomes] |
| rs28370683 | 0.86[EUR][1000 genomes] |
| rs72031906 | 0.81[ASN][1000 genomes] |
| rs72644819 | 0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs949640 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014