SNP Report

Basic Infomation

Name	rs17458613 dbSNP
Location	chr:12,40519991
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10784340	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs10877913	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs10877955	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10877971	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10878123	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174831	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs11174928	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11175102	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11175103	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11175256	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11175332	0.85[ASN][1000 genomes]
rs11175371	1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs11175401	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11175422	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11175540	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12372213	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1472117	1.00[YRI][hapmap]
rs1491924	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17442157	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17458156	0.86[EUR][1000 genomes]
rs17518546	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2131088	1.00[YRI][hapmap]
rs2638270	0.85[ASN][1000 genomes]
rs2708437	1.00[YRI][hapmap]
rs2708438	1.00[YRI][hapmap]
rs2708478	0.80[EUR][1000 genomes]
rs28365172	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28365179	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28365683	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs28370683	0.86[EUR][1000 genomes]
rs72031906	0.82[ASN][1000 genomes]
rs72644819	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs949640	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)