SNP Report

Basic Infomation

Name	rs28365179 dbSNP
Location	chr:12,40501033
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506148	0.81[CHB][hapmap]
rs10784340	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10877913	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10877955	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10877971	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10878123	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11174831	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11174928	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11175102	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11175103	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11175256	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11175332	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11175371	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs11175401	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11175422	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs11175540	0.90[EUR][1000 genomes]
rs11175558	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs11564115	0.94[JPT][hapmap]
rs12372213	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1472117	0.89[JPT][hapmap]
rs1491924	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes]
rs1491942	0.84[JPT][hapmap]
rs17442157	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17443199	0.82[CHB][hapmap]
rs17458156	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17458613	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17518546	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2131088	0.89[JPT][hapmap]
rs2201144	0.94[JPT][hapmap]
rs2638244	0.85[JPT][hapmap]
rs2638270	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2638271	0.85[JPT][hapmap]
rs2708437	0.94[JPT][hapmap]
rs2708438	0.94[JPT][hapmap]
rs2708478	0.80[EUR][1000 genomes]
rs2723269	0.89[JPT][hapmap]
rs28365172	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28365683	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28370683	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72644819	0.92[EUR][1000 genomes]
rs949640	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC2A13	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)