SNP Report

Basic Infomation

Name	rs17443199 dbSNP
Location	chr:12,40586433
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10878123	0.85[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10878208	0.81[CHB][hapmap];0.89[ASN][1000 genomes]
rs11175256	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs11175332	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11175371	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11175401	0.86[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs11175405	0.95[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11175422	0.85[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs11175540	0.96[ASN][1000 genomes]
rs11175558	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11564115	0.89[JPT][hapmap]
rs12581617	0.86[ASN][1000 genomes]
rs1472117	0.89[JPT][hapmap]
rs1491924	0.85[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs1491942	0.83[JPT][hapmap]
rs2046931	0.87[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs2131088	0.89[JPT][hapmap]
rs2201144	0.89[JPT][hapmap]
rs2638244	0.90[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs2638268	0.81[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs2638269	0.84[ASN][1000 genomes]
rs2638270	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2638271	0.80[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs2708437	0.89[JPT][hapmap]
rs2708438	0.89[JPT][hapmap]
rs2708478	0.84[ASN][1000 genomes]
rs2723269	0.89[JPT][hapmap]
rs28365179	0.82[CHB][hapmap]
rs72031906	0.83[ASN][1000 genomes]
rs72644819	0.96[ASN][1000 genomes]
rs7310104	0.87[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs949640	0.85[CHB][hapmap];0.89[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)