SNP Report
Basic Infomation
| Name | rs2638269 dbSNP |
|---|---|
| Location | chr:12,40541197 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10878208 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11175332 | 0.89[ASN][1000 genomes] |
| rs11175371 | 0.89[ASN][1000 genomes] |
| rs11175401 | 0.82[ASN][1000 genomes] |
| rs11175405 | 0.95[ASN][1000 genomes] |
| rs11175422 | 0.81[ASN][1000 genomes] |
| rs12581617 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17443199 | 0.84[ASN][1000 genomes] |
| rs2046931 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2638222 | 0.81[AFR][1000 genomes] |
| rs2638244 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2638268 | 0.99[ASN][1000 genomes] |
| rs2638270 | 0.89[ASN][1000 genomes] |
| rs2638271 | 0.99[ASN][1000 genomes] |
| rs2708478 | 0.91[ASN][1000 genomes] |
| rs7310104 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000260943 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014