SNP Report

Basic Infomation

Name	rs11175405 dbSNP
Location	chr:12,40557814
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 30)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10878123	0.89[JPT][hapmap]
rs10878208	0.90[CHB][hapmap];0.96[ASN][1000 genomes]
rs11175256	0.89[JPT][hapmap]
rs11175332	0.90[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11175371	0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11175401	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs11175422	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs11175540	0.85[ASN][1000 genomes]
rs11175558	0.95[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs11564115	0.89[JPT][hapmap]
rs12581617	0.94[ASN][1000 genomes]
rs1472117	0.89[JPT][hapmap]
rs1491924	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1491942	0.94[JPT][hapmap]
rs17443199	0.95[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2046931	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2131088	0.89[JPT][hapmap]
rs2201144	0.89[JPT][hapmap]
rs2638244	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2638268	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2638269	0.95[ASN][1000 genomes]
rs2638270	0.84[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2638271	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2708437	0.89[JPT][hapmap]
rs2708438	0.89[JPT][hapmap]
rs2708478	0.96[ASN][1000 genomes]
rs2723269	0.89[JPT][hapmap]
rs72644819	0.85[ASN][1000 genomes]
rs7310104	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs949640	0.89[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000223914	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)