SNP Report
Name | rs11175558   dbSNP |
---|---|
Location | chr:12,40590346 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10878123 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
rs10878208 | 0.81[CHB][hapmap] |
rs11175256 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
rs11175332 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs11175371 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap] |
rs11175401 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
rs11175405 | 0.95[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap] |
rs11175422 | 0.85[CHB][hapmap];0.95[JPT][hapmap] |
rs11564115 | 0.95[JPT][hapmap] |
rs1472117 | 0.95[JPT][hapmap] |
rs1491924 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
rs1491942 | 0.89[JPT][hapmap] |
rs17443199 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
rs2046931 | 0.87[CHB][hapmap];0.95[JPT][hapmap] |
rs2131088 | 0.95[JPT][hapmap] |
rs2201144 | 0.95[JPT][hapmap] |
rs2638244 | 0.91[CHB][hapmap];0.95[JPT][hapmap] |
rs2638268 | 0.80[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap] |
rs2638270 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2638271 | 0.91[CHB][hapmap];0.95[JPT][hapmap] |
rs2708437 | 0.95[JPT][hapmap] |
rs2708438 | 0.95[JPT][hapmap] |
rs2723269 | 0.95[JPT][hapmap] |
rs28365179 | 0.82[CHB][hapmap];0.84[JPT][hapmap] |
rs7310104 | 0.87[CHB][hapmap];0.95[JPT][hapmap] |
rs949640 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
Symbol | Regulation type |
---|---|
LRRK2 | Proximal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014