SNP Report
Basic Infomation
| Name | rs1491942 dbSNP |
|---|---|
| Location | chr:12,40620808 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506148 | 0.83[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs10878123 | 0.95[JPT][hapmap] |
| rs10878208 | 0.83[ASN][1000 genomes] |
| rs11175256 | 0.95[JPT][hapmap] |
| rs11175332 | 0.89[JPT][hapmap] |
| rs11175371 | 0.80[JPT][hapmap] |
| rs11175401 | 0.95[JPT][hapmap] |
| rs11175405 | 0.94[JPT][hapmap] |
| rs11175422 | 0.95[JPT][hapmap] |
| rs11175558 | 0.89[JPT][hapmap] |
| rs11564115 | 0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs1388596 | 0.81[CHB][hapmap] |
| rs1472117 | 0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1491924 | 0.95[JPT][hapmap] |
| rs17443199 | 0.83[JPT][hapmap] |
| rs1817817 | 0.86[ASN][1000 genomes] |
| rs1907634 | 0.86[ASN][1000 genomes] |
| rs2046931 | 0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2131088 | 0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2201144 | 0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2638244 | 0.95[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2638268 | 0.95[JPT][hapmap] |
| rs2638270 | 0.89[JPT][hapmap] |
| rs2638271 | 0.95[JPT][hapmap] |
| rs2708436 | 0.86[ASN][1000 genomes] |
| rs2708437 | 0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2708438 | 0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2708441 | 0.86[ASN][1000 genomes] |
| rs2708478 | 0.83[ASN][1000 genomes] |
| rs2723268 | 0.82[ASN][1000 genomes] |
| rs2723269 | 0.81[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs28365179 | 0.84[JPT][hapmap] |
| rs7310104 | 0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs949640 | 0.95[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000225342 | Proximal transcriptional regulation |
| ENSG00000225342 | Distal transcriptional regulation |
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| SLC2A13 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014