SNP Report
Name | rs11175371   dbSNP |
---|---|
Location | chr:12,40548078 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10784340 | 1.00[YRI][hapmap] |
rs10877913 | 1.00[YRI][hapmap] |
rs10877955 | 1.00[YRI][hapmap] |
rs10877971 | 1.00[YRI][hapmap] |
rs10878123 | 0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
rs10878208 | 0.81[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes] |
rs11174831 | 1.00[YRI][hapmap] |
rs11175256 | 0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes] |
rs11175332 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11175401 | 0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes] |
rs11175405 | 0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11175422 | 0.85[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes] |
rs11175540 | 0.90[ASN][1000 genomes] |
rs11175558 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap] |
rs11564115 | 0.95[JPT][hapmap] |
rs12581617 | 0.80[ASN][1000 genomes] |
rs1472117 | 0.85[JPT][hapmap];1.00[YRI][hapmap] |
rs1491924 | 0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes] |
rs1491942 | 0.80[JPT][hapmap] |
rs17443199 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17458613 | 1.00[YRI][hapmap];0.85[ASN][1000 genomes] |
rs17518546 | 0.84[ASN][1000 genomes] |
rs2046931 | 0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
rs2131088 | 0.85[JPT][hapmap];1.00[YRI][hapmap] |
rs2201144 | 0.95[JPT][hapmap] |
rs2638244 | 0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes] |
rs2638268 | 0.81[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2638269 | 0.89[ASN][1000 genomes] |
rs2638270 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2638271 | 0.80[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2708437 | 0.95[JPT][hapmap];1.00[YRI][hapmap] |
rs2708438 | 0.95[JPT][hapmap];1.00[YRI][hapmap] |
rs2708478 | 0.81[ASN][1000 genomes] |
rs2723269 | 0.85[JPT][hapmap] |
rs28365179 | 0.82[CHB][hapmap];0.85[JPT][hapmap] |
rs72031906 | 0.88[ASN][1000 genomes] |
rs72644819 | 0.90[ASN][1000 genomes] |
rs7310104 | 0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
rs949640 | 0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000223914 | Proximal transcriptional regulation |
LRRK2 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014