SNP Report
Basic Infomation
| Name | rs11175540 dbSNP |
|---|---|
| Location | chr:12,40586295 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10878123 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10878208 | 0.85[ASN][1000 genomes] |
| rs11175256 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11175332 | 0.89[ASN][1000 genomes] |
| rs11175371 | 0.90[ASN][1000 genomes] |
| rs11175401 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11175405 | 0.85[ASN][1000 genomes] |
| rs11175422 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12581617 | 0.82[ASN][1000 genomes] |
| rs1472117 | 0.82[ASN][1000 genomes] |
| rs1491924 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17443199 | 0.96[ASN][1000 genomes] |
| rs17458613 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17518546 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1817817 | 0.82[ASN][1000 genomes] |
| rs1907634 | 0.82[ASN][1000 genomes] |
| rs2046931 | 0.85[ASN][1000 genomes] |
| rs2201144 | 0.84[ASN][1000 genomes] |
| rs2638244 | 0.86[ASN][1000 genomes] |
| rs2638268 | 0.80[ASN][1000 genomes] |
| rs2638270 | 0.90[ASN][1000 genomes] |
| rs2638271 | 0.80[ASN][1000 genomes] |
| rs2708436 | 0.82[ASN][1000 genomes] |
| rs2708437 | 0.82[ASN][1000 genomes] |
| rs2708438 | 0.82[ASN][1000 genomes] |
| rs2708441 | 0.82[ASN][1000 genomes] |
| rs2708478 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28365179 | 0.90[EUR][1000 genomes] |
| rs72031906 | 0.87[ASN][1000 genomes] |
| rs72644819 | 0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7310104 | 0.85[ASN][1000 genomes] |
| rs949640 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014