SNP Report

Basic Infomation

Name	rs2638244 dbSNP
Location	chr:12,40572224
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10878123	0.90[JPT][hapmap]
rs10878208	0.95[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11175256	0.90[JPT][hapmap]
rs11175332	0.91[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11175371	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11175401	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs11175405	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11175422	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs11175540	0.86[ASN][1000 genomes]
rs11175558	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11564115	0.90[JPT][hapmap]
rs12581617	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1472117	0.90[JPT][hapmap]
rs1491924	0.85[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs1491942	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs17443199	0.90[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs2046931	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2131088	0.90[JPT][hapmap]
rs2201144	0.90[JPT][hapmap]
rs2638268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2638269	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2638270	0.91[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2638271	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[ASN][1000 genomes]
rs2708404	0.83[ASW][hapmap];0.94[LWK][hapmap];0.86[MKK][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs2708437	0.90[JPT][hapmap]
rs2708438	0.90[JPT][hapmap]
rs2708478	0.94[ASN][1000 genomes]
rs2723269	0.90[JPT][hapmap]
rs28365179	0.85[JPT][hapmap]
rs72644819	0.86[ASN][1000 genomes]
rs7310104	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs949640	0.82[CHD][hapmap];0.90[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
LRRK2	SCAN
KIF21A	SCAN
LRRK2	SCAN
SLC2A13	SCAN