SNP Report

Basic Infomation

Name	rs2131088 dbSNP
Location	chr:12,40629554
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506148	0.91[CHB][hapmap];0.91[ASN][1000 genomes]
rs10878123	1.00[JPT][hapmap]
rs11175256	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11175332	0.95[JPT][hapmap]
rs11175371	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs11175401	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11175405	0.89[JPT][hapmap]
rs11175422	1.00[JPT][hapmap]
rs11175558	0.95[JPT][hapmap]
rs11564115	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1388596	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1472117	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1491924	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1491939	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1491942	0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs17443199	0.89[JPT][hapmap]
rs17458613	1.00[YRI][hapmap]
rs17484286	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs1817817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1907634	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2046931	0.90[JPT][hapmap]
rs2201144	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2638244	0.90[JPT][hapmap]
rs2638268	0.90[JPT][hapmap]
rs2638270	0.95[JPT][hapmap]
rs2638271	0.90[JPT][hapmap]
rs2708436	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2708437	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2708438	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2708441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2723268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28365179	0.89[JPT][hapmap]
rs4473003	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs7134572	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs7307310	0.81[CHB][hapmap]
rs7310104	0.90[JPT][hapmap]
rs949640	1.00[JPT][hapmap];1.00[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)