SNP Report

Basic Infomation

Name	rs7307310 dbSNP
Location	chr:12,40745181
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 87)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1035812	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1035813	0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10506148	0.82[CHB][hapmap]
rs10732751	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10748040	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs10784486	0.81[ASW][hapmap]
rs10784518	0.82[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10784528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10784536	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs12306060	0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1365763	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1365764	0.86[ASN][1000 genomes]
rs1365765	0.82[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1365766	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1388596	0.86[CHB][hapmap];0.88[CHD][hapmap]
rs1427259	0.88[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs1427261	0.88[CEU][hapmap];0.89[JPT][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs1427263	0.86[ASW][hapmap];0.94[YRI][hapmap]
rs1427267	0.86[ASW][hapmap];0.94[YRI][hapmap]
rs1427271	0.82[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1427272	0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1427273	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1491939	0.86[CHB][hapmap]
rs17461964	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17484286	0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs1816207	0.88[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs2069228	0.94[YRI][hapmap]
rs2131088	0.81[CHB][hapmap]
rs2162472	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs2404836	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs2723269	0.81[CHB][hapmap]
rs2896975	0.94[YRI][hapmap]
rs2896978	0.82[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs3789330	0.82[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs3861083	0.88[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs3943893	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4099579	0.88[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs4465428	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4473003	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4767970	0.82[CHB][hapmap]
rs4767971	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767972	0.80[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4768224	0.81[ASW][hapmap]
rs4768231	0.84[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4768232	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768233	0.82[CHB][hapmap];0.80[CHD][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768234	0.82[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768235	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768238	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5017705	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs6581723	0.89[JPT][hapmap];0.82[TSI][hapmap]
rs7131694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134572	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7136122	0.89[JPT][hapmap]
rs7137437	0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7137665	0.86[ASW][hapmap];0.93[YRI][hapmap]
rs715402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs721709	0.86[ASW][hapmap];0.94[YRI][hapmap]
rs7294952	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7294958	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7296657	0.82[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7302503	0.86[ASW][hapmap];0.94[YRI][hapmap]
rs7305344	0.94[YRI][hapmap]
rs7306545	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs7306684	0.80[EUR][1000 genomes]
rs7308626	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs7311247	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7312497	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7313525	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7313895	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7314455	0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7314863	0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7954061	0.82[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7956787	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7956898	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7957057	0.86[ASW][hapmap];0.83[YRI][hapmap]
rs7957151	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7962116	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs7962370	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[GIH][hapmap];0.80[JPT][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7963086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963697	0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7963987	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs7971919	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs7976724	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs890575	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs919175	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs963243	0.88[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)