SNP Report

Basic Infomation

Name	rs5017705 dbSNP
Location	chr:12,40747772
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1035812	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs1035813	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10732751	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs10748040	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10784518	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10784528	0.89[JPT][hapmap]
rs10784536	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12306060	0.87[CHB][hapmap]
rs1365763	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1365765	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1365766	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1427271	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1427272	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1427273	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2162472	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs2404835	0.86[CHB][hapmap]
rs2404836	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2896978	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs3789330	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs3943893	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4767970	0.91[CHB][hapmap]
rs4767971	0.89[JPT][hapmap]
rs4767972	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs4768231	0.83[JPT][hapmap]
rs4768232	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4768233	0.90[CHB][hapmap]
rs4768234	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs4768235	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7131694	0.89[JPT][hapmap]
rs7137437	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs715402	0.89[JPT][hapmap]
rs7294952	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7294958	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7296657	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs7306545	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7306684	0.82[CHB][hapmap]
rs7307310	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs7308626	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs7311247	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs7313525	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7313895	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7314455	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs7314863	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7954061	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7956787	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7956898	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7957151	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7962116	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7963086	0.89[JPT][hapmap]
rs7963697	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs7963987	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7971919	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7976724	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs890575	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs919175	0.91[CHB][hapmap];0.95[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)