SNP Report

Basic Infomation

Name	rs4767971 dbSNP
Location	chr:12,40732032
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 71)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1035812	0.84[CEU][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1035813	0.84[CEU][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10732751	0.84[CEU][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10748040	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs10784518	0.81[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10784528	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10784536	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs12306060	0.84[CEU][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1365763	0.83[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1365764	0.86[ASN][1000 genomes]
rs1365765	0.81[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1365766	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1388596	0.86[CHB][hapmap]
rs1427259	0.82[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs1427261	0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs1427271	0.81[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1427272	0.84[CEU][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1427273	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1491939	0.81[CHB][hapmap]
rs17461964	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17484286	0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs1816207	0.82[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs2162472	0.84[CEU][hapmap];0.90[JPT][hapmap]
rs2404836	0.83[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs2896978	0.84[CEU][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs3789330	0.84[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs3861083	0.82[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs3943893	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4099579	0.82[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs4465428	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4473003	0.89[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4767972	0.91[CEU][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4768231	0.84[CEU][hapmap];0.84[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4768232	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768233	0.81[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768234	0.81[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768235	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768238	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5017705	0.89[JPT][hapmap]
rs6581723	0.89[JPT][hapmap]
rs7131694	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134572	0.91[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7136122	0.89[JPT][hapmap]
rs7137437	0.84[CEU][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs715402	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7294952	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7294958	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7296657	0.84[CEU][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7306545	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs7306684	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs7307310	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7308626	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs7311247	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7312497	0.84[CEU][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7313525	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7313895	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7314455	0.84[CEU][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7314863	0.84[CEU][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7954061	0.84[CEU][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7956787	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7956898	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7957151	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7962116	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs7962370	0.89[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7963086	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963697	0.84[CEU][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7963987	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs7971919	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs7976724	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs890575	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs919175	0.84[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)