SNP Report
Basic Infomation
| Name | rs4768238 dbSNP |
|---|---|
| Location | chr:12,40761358 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10748040 | 0.84[ASN][1000 genomes] |
| rs10784528 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10784536 | 0.84[ASN][1000 genomes] |
| rs1427259 | 0.83[EUR][1000 genomes] |
| rs1427261 | 0.83[EUR][1000 genomes] |
| rs1816207 | 0.83[EUR][1000 genomes] |
| rs2162472 | 0.84[ASN][1000 genomes] |
| rs2404836 | 0.82[ASN][1000 genomes] |
| rs2896978 | 0.85[ASN][1000 genomes] |
| rs3789330 | 0.84[ASN][1000 genomes] |
| rs3861083 | 0.83[EUR][1000 genomes] |
| rs4099579 | 0.83[EUR][1000 genomes] |
| rs4465428 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4473003 | 0.90[EUR][1000 genomes] |
| rs4767971 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7131694 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7134572 | 0.90[EUR][1000 genomes] |
| rs715402 | 0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7306545 | 0.84[ASN][1000 genomes] |
| rs7307310 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7308626 | 0.84[ASN][1000 genomes] |
| rs7962116 | 0.84[ASN][1000 genomes] |
| rs7962370 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7963086 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7963987 | 0.84[ASN][1000 genomes] |
| rs7971919 | 0.84[ASN][1000 genomes] |
| rs7976724 | 0.84[ASN][1000 genomes] |
| rs890575 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014