SNP Report

Basic Infomation

Name	rs7962370 dbSNP
Location	chr:12,40765929
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 18)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10784528	1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1427259	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1427261	0.88[CEU][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs17484286	0.86[CHB][hapmap]
rs1816207	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs3861083	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs4099579	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs4465428	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[EUR][1000 genomes]
rs4473003	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs4767971	0.89[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4767972	0.80[CEU][hapmap]
rs4768238	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6581723	0.82[TSI][hapmap]
rs7131694	1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7134572	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs715402	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7307310	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[GIH][hapmap];0.80[JPT][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7963086	1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)